Tuesday, October 4, 2011

openSNP and Personal Genomics

So if you haven't heard, Direct to Customer (DTC) genomics has hit the mainstream. Multiple companies (23andMe, deCODEme, etc.) will now genotype you, providing you with a detailed rundown of all your genetic traits and tendencies...
Well, not exactly.

Sunday, October 2, 2011

California Almonds


I recently got a tour of some Cali Central Valley almond farms from the Almond Doctor.

The nuts were in the process of being harvested. The first step is to shake the nuts off the tree with a machine that grabs them around the trunk (here's a video*). One way you can tell almond and peach (both Prunus species) orchards apart is to look at how low the first branches are. Almond trees are trained to branch higher above the ground to give the machine room to grab them. Peach trees are trained to branch almost immediately above the ground to help most of the canopy stay low enough to be reached without ladders (due to the increased chance of injuries). Maximum canopy height is more rigorously limited in peaches for the same reason.

Thursday, September 29, 2011

Blue Potato Chips

JetBlue airlines now gives out blue potato chips as their "official" snack.

I'm very impressed by the fact that these blue potato chips exist. It's no small feat to create a good-frying potato with excellent agronomic qualities in itself. I can't imagine crossing in blue coloring (anthocyanin expression) on top of this in a reasonable amount of time - especially since potatoes aren't true to seed. Non true to seed crops like potatoes have messy, highly heterozygous genomes that when crossed (or selfed) produce offspring that segregate for all the traits you care about. I've been told that potato breeders typically make a bunch of crosses in the first year of their program - and then spend the rest of their careers evaluating and propagating the resulting segregants asexually.

Though the chips really are purple, not blue...

Wednesday, September 21, 2011

Polycultures in Modern Ag?

The September issue of CSA news has a nice (open access) article entitled: "Do polycultures have a role in modern agriculture?"

Some key caveats:
  • While diverse plant mixtures have been associated with many benefits, high biomass yield (i.e. what farmers get paid for) is usually not one of them.
  • It's very difficult to maintain complex plant mixtures - usually a single species will come to dominate.
  • Our crop monocultures represent those crops that are best adapted to a given region.
  • Establishing, maintaing and harvesting polycultures will require significant effort, risk, investments and training for farmers.
They conclude that polycultures are intriguing but definitely require more (agronomically realistic) research. 

Thoughts?

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